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Beyond the Pipeline: Advancing Diversity in Challenging Times
Last Friday, I had the chance to join a panel discussion on advancing diversity in challenging times. I was lucky to be joined by two brilliant next-gen scientists, Francince Camacho and Saba Nafees.
May 20, 2025
4 min read
Showcase: My Quick Dive into Pipeline Automation with Seqera AI
Example of automation with miniaml investment but good results
Nov 21, 2024
2 min read
Perspective: Note directed to leadership in Biology, Translational, Chemistry and Technology.
Talk to a computational biologist scientist from the idea not the data
Aug 15, 2024
2 min read
My Learning Experience with Computational Infrastructure in Biotech/Industry
The mistakes and the success of building as fastest as possible the infrastructure
Feb 28, 2024
5 min read
3D-printer WALL-E toilet paper holder
Finally tired of the broken TP holder and how to make a trip to Home Depot a 2 months project.
Dec 9, 2023
1 min read
My story with cancer - Jimmy fund walk Oct 1st
My personal experience with cancer and how much work still to do
Last updated on Sep 30, 2023
6 min read
My transition to biotech
My personal experience giving up on academia to bet on industry
Oct 3, 2019
5 min read
How to set up cellranger to make your hpc admin happy
I found myself to force to use cellranger. Meanwhile it helps a lot to run from bcl files to single cell counts matrixes, I discovered that is quite difficult to control many options related to optimization.
Jul 11, 2019
5 min read
How to set up public dataset analysis with bcbio-nextgen
We use bcbio-nextgen for the analysis of sequencing data, mainly, (sc)RNAseq, smallRNAseq, DNASeq and ChIPSeq. It is not rare that we get collaborators who wants to re-analyze public data-set. Inside bcbio, we have bcbio_prepare_samples.
Apr 5, 2019
2 min read
Get colors for your heatmap annotation
This post will show how to configure quickly the colors for the annotation of rows/columns that go on top or on the side of a heatmap. I normally use pheatmap a lot.
Sep 21, 2018
5 min read
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