Skills

R

100%

python

90%

Statistics

80%

Visualization

70%

Neurodegeneration

80%

Experience

 
 
 
 
 

Research Scientist - Bioinformatics Core Supervisor

Picower for Memory and Learning Institute - MIT

Apr 2019 – Present Cambridge
Responsibilities include:

  • Leading miRNA transcriptomic open project
  • Analysing genomic/transcriptomic data
  • Developing bioinformatic tools
  • Infrastructure architect
  • Managing knowledge-base platform
  • Teaching development
  • Mentoring
  • Knowledge-base
 
 
 
 
 

Research Scientist

Harvard Chan School

Jun 2017 – Apr 2019 Boston
Responsibilities include:

  • Leading miRNA transcriptomic open project
  • Analysing genomic data
  • Developing bioinformatic tools
  • Managing knowledge-base platform
  • Mentoring
 
 
 
 
 

Research Associate

Harvard Chan School

May 2014 – Jun 2017 Boston
Analyzed sequencing data in pathogenic conditions. Developed bioinformatics tools for sequencing data (RNA-seq, smallRNA-seq, ChIP-seq, ATAC-seq).
 
 
 
 
 

Post-doctoral fellow

Institute of Biotechnology and Biomedicine

Feb 2013 – Apr 2014 Barcelona
Detected de-novo transcripts as effect of inversion in the HapMap population.Expression quantitive trait loci analysis of inversion in the HapMap population.
 
 
 
 
 

Post-doctoral fellow

Institute of Predictive and Personalized Medicine of Cancer

Sep 2011 – Feb 2013 Barcelona
Determined small RNA characterization in human sperm samples.

Recent Posts

My personal experience giving up on academia to bet on industry

I found myself to force to use cellranger. Meanwhile it helps a lot to run from bcl files to single cell counts matrixes, I discovered …

We use bcbio-nextgen for the analysis of sequencing data, mainly, (sc)RNAseq, smallRNAseq, DNASeq and ChIPSeq. It is not rare that we …

This post will show how to configure quickly the colors for the annotation of rows/columns that go on top or on the side of a heatmap. …

This post should show you an easy way to get the following data type integrated into a figure: functional enrichment analysis gene …

Recent & Upcoming Talks

Advances in high-throughput sequencing technologies led to the discovery of isomiRs, which are miRNA sequence variants. In the last …

MicroRNAs (miRNAs) are small RNA molecules (~22 nucleotide long) involved in post-transcriptional gene regulation. Advances in …

The study of small RNA helps us understand some of the complexity of gene regulation of a cell. Of the different types of small RNAs, …

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