Small RNA-seq quality control plots

Plot size distribution of small RNA-seq data.

bcbSmallSize(bcb, color = NULL)

bcbSmallSizeDist(bcb, color = NULL, percentage = TRUE)

bcbSmallMicro(bcb, color = NULL)

bcbSmallCluster(bcb, color = NULL)

Arguments

bcb	bcbioSmallRnaDataSet.
color	Column in metadata to use to color the bars.
percentage	Whether to plot the percentage or absolute number.

Value

ggplot.

Examples

library(DEGreport)
data(sbcb)
bcbSmallSize(sbcb, color = "population")
bcbSmallSizeDist(sbcb, color = "population")
bcbSmallMicro(sbcb, color = "population")
bcbSmallCluster(sbcb, color = "population")
#> Using ann as id variables
#> Joining, by = "variable"
#> Using  as id variables
#> Warning: Transformation introduced infinite values in continuous y-axis
#> Warning: Removed 1258 rows containing non-finite values (stat_boxplot).
data <- bcbSmallPCA(sbcb, minAverage=8)
degPCA(data[["counts"]], data[["annotation"]], condition = "population")
data <- bcbSmallPCA(sbcb, type = "cluster", minAverage = 8)
degPCA(data[["counts"]], data[["annotation"]], condition = "population")