All functions

adapter(<bcbioSmallRnaDataSet>) `adapter<-`(<bcbioSmallRnaDataSet>,<list>)

Sample adapter accesor

bcbio(<bcbioSmallRnaDataSet>) `bcbio<-`(<bcbioSmallRnaDataSet>)

bcbioSmallRnaDataSet caller accessors

bcbioSmallRna-package

bcbioSmallRna

bcbioSmallRnaDataSet-class

bcbioSmallRnaDataSet

bcbSmallDownload()

Download Dependency File

loadSmallRnaRun()

Load small RNA-seq bcbio-nextgen run

metrics(<bcbioSmallRnaDataSet>)

Sample metrics accesor

mirna(<bcbioSmallRnaDataSet>) isomir(<bcbioSmallRnaDataSet>) cluster(<bcbioSmallRnaDataSet>) trna(<bcbioSmallRnaDataSet>)

mirna count data information

bcbSmallSize() bcbSmallSizeDist() bcbSmallMicro() bcbSmallCluster()

Small RNA-seq quality control plots

bcbSmallPCA()

Plot PCA of the different small RNA data

sbcb

Tiny example of bcbioSmallRna object