Lorena Pantano

Latest

• Lorena Pantano: Transitioning through the nf-core era at the Harvard Chan Bioinformatics Core
• Women in Life Sciences: How do we Close the Gender Gap in Leadership?
• Inside a Bioinformatics Startup – with NextRNA Therapeutics
• Single-cell cloning of human T-cell lines reveals clonal variation in cell death responses to chemotherapeutics.
• Sex Differences in Adrenal Bmal1 Deletion-Induced Augmentation of Glucocorticoid Responses to Stress and ACTH in Mice.
• A High-Throughput Screening Identifies MicroRNA Inhibitors That Influence Neuronal Maintenance and/or Response to Oxidative Stress.
• Multi omics analysis of fibrotic kidneys in two mouse models.
• miRNA variants (isomiRs): real molecules or sequencing artifacts?
• Evolutionary and functional impact of common polymorphic inversions in the human genome
• Sex-dependent changes in miRNA expression in the bed nucleus of the stria terminalis following stress
• MiRNA Wars: The isomiRs menance
• Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API
• The circulating metabolome of human starvation
• miRTOP: An open source community project for the development of a unified format file for miRNA data
• Circulating miRNAs, isomiRs and small RNA clusters in human plasma and breast milk
• bcbioRNASeq: R package for bcbio RNA-seq analysis
• Maintenance of macrophage transcriptional programs and intestinal homeostasis by epigenetic reader SP140
• Molecular, phenotypic, and sample-associated data to describe pluripotent stem cell lines and derivatives
• Empirical comparison of reduced representation bisulfite sequencing and Infinium BeadChip reproducibility and coverage of DNA methylation in humans
• Characterization of the small RNA transcriptome using the bcbio-nextgen python framework
• Specific small-RNA signatures in the amygdala at premotor and motor stages of Parkinson's disease revealed by deep sequencing analysis.
• The small RNA content of human sperm reveals pseudogene-derived piRNAs complementary to protein-coding genes.
• Functional Impact and Evolution of a Novel Human Polymorphic Inversion That Disrupts a Gene and Creates a Fusion Transcript
• Paternal Diet Defines Offspring Chromatin State and Intergenerational Obesity
• InvFEST, a database integrating information of polymorphic inversions in the human genome
• A highly expressed miR-101 isomiR is a functional silencing small RNA.
• Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor.
• A Pathogenic Mechanism in Huntington's Disease Involves Small CAG-Repeated RNAs with Neurotoxic Activity.
• A non-biased framework for the annotation and classification of the non-miRNA small RNA transcriptome.
• A myriad of miRNA variants in control and Huntington's disease brain regions detected by massively parallel sequencing
• SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells
• Fibroblast-derived induced pluripotent stem cells show no common retroviral vector insertions.
• Identification of Copy Number Variants Defining Genomic Differences among Major Human Groups
• ProSeeK: A web server for MLPA probe design
• Highlights from the Third International Society for Computational Biology Student Council Symposium at the Fifteenth Annual International Conference on Intelligent Systems for Molecular Biology
• Genome assembly comparison identifies structural variants in the human genome.