13 years of experience working with high-dimensional genomic data, implementing new methods to interpret data for decision-making in research/development projects. Built and managed the Illumina and Nanopore sequencing capabilities in 3 companies applying the technology to platforms for target discovery, gene editing, SHAPE-MaP and MoA projects. 8 years studying neurodegenerative diseases, and 5 years working in Oncology field. Experience harmonizing thousands of multi-omics data in a unique dashboard for preclinical and clinical project stages. Accessed controlled raw data from NIH protected datasets (i.e. TCGA). Built 6 bioinformatics packages commonly used nowadays by the open-source community. Managed a team of five scientists and engineers to build and maintain compute infrastructure, reproducible analyses and data sharing with interactive web-apps. Managed efficiently cloud computing and storage infrastructure with AWS services, PostIt (Rstudio) and Nextflow Seqera.
JOSS editor. Join our women in bioinformatics in Boston area.
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mirtop | |
seqcluster | |
seqclusterViz | |
isomiRs | |
DEGreport |
contributed to: nf-core, bcbio-nextgen, cloudbiolinux, bcbioRNASeq, bioconda, multiqc
PhD in Biomedicine, 2011
Pompeu Fabra University
Ms in Bioinformatics, 2008
Pompeu Fabra University
BSc in Biochemistry, 2005
University of Granada