My scientific life


Read some non published work about tools comparison: mypubs


All listed from coursera.


Bold papers are the ones I like most.

Bailey P, Chang DK, Nones K, Johns AL,et al (me in the middle of >50 authors). (2016). Genomic analyses identify molecular subtypes of pancreatic cancer. Nature. doi: 10.1038/nature16965.

Pantano, L., Friedländer, M. R., Escaramís, G., Lizano, E., Pallarès-Albanell, J., Ferrer, I., … Martí, E. (2015). Specific Small-RNA Signatures in the Amygdala at Premotor and Motor Stages of Parkinson’s Disease Revealed by Deep Sequencing Analysis. Bioinformatics (Oxford, England).

Pantano, L., Jodar, M., Bak, M., Ballescà, J. L., Tommerup, N., Oliva, R., & Vavouri, T. (2015). The small RNA content of human sperm reveals pseudogene-derived piRNAs complementary to protein-coding genes. RNA (New York, N.Y.), 21(6), 1085–95.

Öst, A., Lempradl, A., Casas, E., Weigert, M., Tiko, T., Deniz, M., … Pospisilik, J. A. (2014). Paternal Diet Defines Offspring Chromatin State and Intergenerational Obesity. Cell, 159(6), 1352–1364.

Martínez-Fundichely, A., Casillas, S., Egea, R., Ràmia, M., Barbadilla, A., Pantano, L., … Cáceres, M. (2014). InvFEST, a database integrating information of polymorphic inversions in the human genome. Nucleic Acids Research, 42(D1).

Llorens, F., Hummel, M., Pantano, L., Pastor, X., Vivancos, A., Castillo, E., … Sumoy, L. (2013). Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor. BMC Genomics, 14, 371.

Llorens, F., Bañez-Coronel, M., Pantano, L., del Río, J. A., Ferrer, I., Estivill, X., & Martí, E. (2013). A highly expressed miR-101 isomiR is a functional silencing small RNA. BMC Genomics, 14, 104.

Bañez-Coronel, M., Porta, S., Kagerbauer, B., Mateu-Huertas, E., Pantano, L., Ferrer, I., … Martí, E. (2012). A Pathogenic Mechanism in Huntington’s Disease Involves Small CAG-Repeated RNAs with Neurotoxic Activity. PLoS Genetics, 8(2), e1002481.

Pantano, L., Estivill, X., & Martí, E. (2011). A non-biased framework for the annotation and classification of the non-miRNA small RNA transcriptome. Bioinformatics (Oxford, England), 27(22), 3202–3.

Pantano, L., Estivill, X., & Martí, E. (2010). SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells. Nucleic Acids Research, 38(5), e34. Retrieved from

Martí, E., Pantano, L., Bañez-Coronel, M., Llorens, F., Miñones-Moyano, E., Porta, S., … Estivill, X. (2010). A myriad of miRNA variants in control and Huntington’s disease brain regions detected by massively parallel sequencing. Nucleic Acids Research, 38(20), 7219–7235. Retrieved from

Armengol, L., Villatoro, S., González, J. R., Pantano, L., García-Aragonés, M., Rabionet, R., … Estivill, X. (2009). Identification of Copy Number Variants Defining Genomic Differences among Major Human Groups. PLoS ONE, 4(9), 13. Retrieved from

Varas, F., Stadtfeld, M., de Andres-Aguayo, L., Maherali, N., di Tullio, A., Pantano, L., … Graf, T. (2009). Fibroblast-derived induced pluripotent stem cells show no common retroviral vector insertions. Stem Cells (Dayton, Ohio), 27(2), 300–6.

Pantano, L., Armengol, L., Villatoro, S., & Estivill, X. (2008). ProSeeK: A web server for MLPA probe design. BMC Genomics, 9(1), 573. Retrieved from

Grynberg, P., Abeel, T., Lopes, P., Macintyre, G., & Rubino, L. P. (2007). Highlights from the Third International Society for Computational Biology Student Council Symposium at the Fifteenth Annual International Conference on Intelligent Systems for Molecular Biology. BMC Bioinformatics, 12(Suppl 11). Retrieved from

Khaja, R., Zhang, J., MacDonald, J. R., He, Y., Joseph-George, A. M., Wei, J., … Feuk, L. (2006). Genome assembly comparison identifies structural variants in the human genome. Nature Genetics, 38(12), 1413–1418. Retrieved from