My scientific life

contributions

Read some non published work about tools comparison: mypubs

courses

All listed from coursera.

publication

Bold papers are the ones I like most.

Bailey P, Chang DK, Nones K, Johns AL,et al (me in the middle of >50 authors). (2016). Genomic analyses identify molecular subtypes of pancreatic cancer. Nature. doi: 10.1038/nature16965.

Pantano, L., Friedländer, M. R., Escaramís, G., Lizano, E., Pallarès-Albanell, J., Ferrer, I., … Martí, E. (2015). Specific Small-RNA Signatures in the Amygdala at Premotor and Motor Stages of Parkinson’s Disease Revealed by Deep Sequencing Analysis. Bioinformatics (Oxford, England). http://doi.org/10.1093/bioinformatics/btv632

Pantano, L., Jodar, M., Bak, M., Ballescà, J. L., Tommerup, N., Oliva, R., & Vavouri, T. (2015). The small RNA content of human sperm reveals pseudogene-derived piRNAs complementary to protein-coding genes. RNA (New York, N.Y.), 21(6), 1085–95. http://doi.org/10.1261/rna.046482.114

Öst, A., Lempradl, A., Casas, E., Weigert, M., Tiko, T., Deniz, M., … Pospisilik, J. A. (2014). Paternal Diet Defines Offspring Chromatin State and Intergenerational Obesity. Cell, 159(6), 1352–1364. http://doi.org/10.1016/j.cell.2014.11.005

Martínez-Fundichely, A., Casillas, S., Egea, R., Ràmia, M., Barbadilla, A., Pantano, L., … Cáceres, M. (2014). InvFEST, a database integrating information of polymorphic inversions in the human genome. Nucleic Acids Research, 42(D1). http://doi.org/10.1093/nar/gkt1122

Llorens, F., Hummel, M., Pantano, L., Pastor, X., Vivancos, A., Castillo, E., … Sumoy, L. (2013). Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor. BMC Genomics, 14, 371. http://doi.org/10.1186/1471-2164-14-371

Llorens, F., Bañez-Coronel, M., Pantano, L., del Río, J. A., Ferrer, I., Estivill, X., & Martí, E. (2013). A highly expressed miR-101 isomiR is a functional silencing small RNA. BMC Genomics, 14, 104. http://doi.org/10.1186/1471-2164-14-104

Bañez-Coronel, M., Porta, S., Kagerbauer, B., Mateu-Huertas, E., Pantano, L., Ferrer, I., … Martí, E. (2012). A Pathogenic Mechanism in Huntington’s Disease Involves Small CAG-Repeated RNAs with Neurotoxic Activity. PLoS Genetics, 8(2), e1002481. http://doi.org/10.1371/journal.pgen.1002481

Pantano, L., Estivill, X., & Martí, E. (2011). A non-biased framework for the annotation and classification of the non-miRNA small RNA transcriptome. Bioinformatics (Oxford, England), 27(22), 3202–3. http://doi.org/10.1093/bioinformatics/btr527

Pantano, L., Estivill, X., & Martí, E. (2010). SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells. Nucleic Acids Research, 38(5), e34. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/20008100

Martí, E., Pantano, L., Bañez-Coronel, M., Llorens, F., Miñones-Moyano, E., Porta, S., … Estivill, X. (2010). A myriad of miRNA variants in control and Huntington’s disease brain regions detected by massively parallel sequencing. Nucleic Acids Research, 38(20), 7219–7235. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/20591823

Armengol, L., Villatoro, S., González, J. R., Pantano, L., García-Aragonés, M., Rabionet, R., … Estivill, X. (2009). Identification of Copy Number Variants Defining Genomic Differences among Major Human Groups. PLoS ONE, 4(9), 13. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/19789632

Varas, F., Stadtfeld, M., de Andres-Aguayo, L., Maherali, N., di Tullio, A., Pantano, L., … Graf, T. (2009). Fibroblast-derived induced pluripotent stem cells show no common retroviral vector insertions. Stem Cells (Dayton, Ohio), 27(2), 300–6. http://doi.org/10.1634/stemcells.2008-0696

Pantano, L., Armengol, L., Villatoro, S., & Estivill, X. (2008). ProSeeK: A web server for MLPA probe design. BMC Genomics, 9(1), 573. Retrieved from http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2625369&tool=pmcentrez&rendertype=abstract

Grynberg, P., Abeel, T., Lopes, P., Macintyre, G., & Rubino, L. P. (2007). Highlights from the Third International Society for Computational Biology Student Council Symposium at the Fifteenth Annual International Conference on Intelligent Systems for Molecular Biology. BMC Bioinformatics, 12(Suppl 11). Retrieved from http://dx.doi.org/10.1186/1471-2105-8-S8-I1

Khaja, R., Zhang, J., MacDonald, J. R., He, Y., Joseph-George, A. M., Wei, J., … Feuk, L. (2006). Genome assembly comparison identifies structural variants in the human genome. Nature Genetics, 38(12), 1413–1418. Retrieved from http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2674632&tool=pmcentrez&rendertype=abstract