Create a deg object that can be used to plot expression values at shiny server:runGist(9930881)

Create a deg object that can be used to plot expression values at shiny server:runGist(9930881)

degObj(counts, design, outfile)

Arguments

counts

Output from get_rank function.
design

Colour used for each gene.
outfile

File that will contain the object.

Value

R object to be load into vizExp.

Examples

data(humanGender)
library(SummarizedExperiment)
degObj(assays(humanGender)[[1]], colData(humanGender), NULL)
#> please, give an output file name.