Deprecated functions in package DEGreport

These functions are provided for compatibility with older versions of DEGreport only and will be defunct at the next release.

Details

The following functions are deprecated and will be made defunct; use the replacement indicated below:

• degRank, degPR, degBIcmd, degBI, degFC, degComb, degNcomb: DESeq2::lcfShrink. This function was trying to avoid big FoldChange in variable genes. There are other methods nowadays like lcfShrink function. DEGreport

See also

Useful links:

• http://lpantano.github.io/DEGreport/

• Report bugs at https://github.com/lpantano/DEGreport/issues