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Genomic analyses identify molecular subtypes of pancreatic cancer
Integrated genomic analysis of 456 pancreatic ductal adenocarcinomas identified 32 recurrently mutated genes that aggregate into 10 …
P Bailey
,
D K Chang
,
K Nones
,
A L Johns
,
A M Patch
,
M C Gingras
,
D K Miller
,
A N Christ
,
T J Bruxner
,
M C Quinn
,
C Nourse
,
L C Murtaugh
,
I Harliwong
,
S Idrisoglu
,
S Manning
,
E Nourbakhsh
,
S Wani
,
L Fink
,
O Holmes
,
V Chin
,
M J Anderson
,
S Kazakoff
,
C Leonard
,
F Newell
,
S Wood
,
Q Xu
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P J Wilson
,
N Cloonan
,
K S Kassahn
,
D Taylor
,
K Quek
,
A Robertson
,
L Pantano
,
L Mincarelli
,
L N Sanchez
,
L Evers
,
J Wu
,
M Pinese
,
M J Cowley
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M D Jones
,
E K Colvin
,
A M Nagrial
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E S Humphrey
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L a Chantrill
,
A Mawson
,
J Humphris
,
A Chou
,
M Pajic
,
C J Scarlett
,
A v Pinho
,
M Giry-Laterriere
,
I Rooman
,
J S Samra
,
J G Kench
,
J a Lovell
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N D Merrett
,
C W Toon
,
K Epari
,
N Q Nguyen
,
A Barbour
,
N Zeps
,
K Moran-Jones
,
N B Jamieson
,
J S Graham
,
F Duthie
,
K Oien
,
J Hair
,
R Grutzmann
,
A Maitra
,
C a Iacobuzio-Donahue
,
C L Wolfgang
,
R a Morgan
,
R T Lawlor
,
V Corbo
,
C Bassi
,
B Rusev
,
P Capelli
,
R Salvia
,
G Tortora
,
D Mukhopadhyay
,
G M Petersen
,
Initiative Australian Pancreatic Cancer Genome
,
D M Munzy
,
W E Fisher
,
S a Karim
,
J R Eshleman
,
R H Hruban
,
C Pilarsky
,
J P Morton
,
O J Sansom
,
A Scarpa
,
E a Musgrove
,
U M Bailey
,
O Hofmann
,
R L Sutherland
,
D a Wheeler
,
A J Gill
,
R a Gibbs
,
J v Pearson
,
N Waddell
,
A v Biankin
,
S M Grimmond
PDF
DOI
The small RNA content of human sperm reveals pseudogene-derived piRNAs complementary to protein-coding genes.
At the end of mammalian sperm development, sperm cells expel most of their cytoplasm and dispose of the majority of their RNA. Yet, …
Lorena Pantano
,
Meritxell Jodar
,
Mads Bak
,
Josep Lluís Ballescà
,
Niels Tommerup
,
Rafael Oliva
,
Tanya Vavouri
PDF
DOI
Paternal Diet Defines Offspring Chromatin State and Intergenerational Obesity
The global rise in obesity has revitalized a search for genetic and epigenetic factors underlying the disease. We present a Drosophila …
Anita Öst
,
Adelheid Lempradl
,
Eduard Casas
,
Melanie Weigert
,
Theodor Tiko
,
Merdin Deniz
,
Lorena Pantano
,
Ulrike Boenisch
,
Pavel M. Itskov
,
Marlon Stoeckius
,
Marius Ruf
,
Nikolaus Rajewsky
,
Gunter Reuter
,
Nicola Iovino
,
Carlos Ribeiro
,
Mattias Alenius
,
Steffen Heyne
,
Tanya Vavouri
,
J. Andrew Pospisilik
PDF
DOI
A highly expressed miR-101 isomiR is a functional silencing small RNA.
BACKGROUND: MicroRNAs (miRNAs) are short non-coding regulatory RNAs that control gene expression usually producing translational …
Franc Llorens
,
Mónica Bañez-Coronel
,
Lorena Pantano
,
Jose Antonio Del Río
,
Isidre Ferrer
,
Xavier Estivill
,
́ Eulàlia Marti
PDF
DOI
Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor.
BACKGROUND: Epidermal Growth Factor (EGF) plays an important function in the regulation of cell growth, proliferation, and …
Franc Llorens
,
Manuela Hummel
,
Lorena Pantano
,
Xavier Pastor
,
Ana Vivancos
,
Ester Castillo
,
Heidi Mattlin
,
Anna Ferrer
,
Matthew Ingham
,
Marc Noguera
,
Robert Kofler
,
Juliane C Dohm
,
Raquel Pluvinet
,
Mònica Bayés
,
Heinz Himmelbauer
,
José Antonio Del Rio
,
Eulàlia Martí
,
Lauro Sumoy
PDF
DOI
A non-biased framework for the annotation and classification of the non-miRNA small RNA transcriptome.
MOTIVATION: Recent progress in high-throughput sequencing technologies has largely contributed to reveal a highly complex landscape of …
Lorena Pantano
,
Xavier Estivill
,
Eulalia Martí
PDF
DOI
SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells
High-throughput sequencing technologies enable direct approaches to catalog and analyze snapshots of the total small RNA content of …
Lorena Pantano
,
Xavier Estivill
,
Eulàlia Martí
PDF
Fibroblast-derived induced pluripotent stem cells show no common retroviral vector insertions.
Several laboratories have reported the reprogramming of mouse and human fibroblasts into pluripotent cells, using retroviruses carrying …
Florencio Varas
,
Matthias Stadtfeld
,
Luisa De Andres-Aguayo
,
Nimet Maherali
,
Alessandro Di Tullio
,
Lorena Pantano
,
Cedric Notredame
,
Konrad Hochedlinger
,
Thomas Graf
PDF
DOI
ProSeeK: A web server for MLPA probe design
Background: The technological evolution of platforms for detecting genome-wide copy number imbalances has allowed the discovery of an …
Lorena Pantano
,
Lluís Armengol
,
Sergi Villatoro
,
Xavier Estivill
PDF
DOI
Genome assembly comparison identifies structural variants in the human genome.
Numerous types of DNA variation exist, ranging from SNPs to larger structural alterations such as copy number variants (CNVs) and …
Razi Khaja
,
Junjun Zhang
,
Jeffrey R MacDonald
,
Yongshu He
,
Ann M Joseph-George
,
John Wei
,
Muhammad a Rafiq
,
Cheng Qian
,
Mary Shago
,
Lorena Pantano
,
Hiroyuki Aburatani
,
Keith Jones
,
Richard Redon
,
Matthew Hurles
,
Lluis Armengol
,
Xavier Estivill
,
Richard J Mural
,
Charles Lee
,
Stephen W Scherer
,
Lars Feuk
PDF
DOI
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